ANNOVAR is a rapid, efficient tool to annotate functional consequences of genetic variation from high-throughput sequencing data. wANNOVAR provides easy and intuitive web-based access to the most popular functionalities of the ANNOVAR software

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Input File
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Please use semicolon or enter as separators. Like "alzheimer;brain".
Try to use multiple terms instead of a super long term
OMIM IDs are also accepted, like 114480 for 'Breast cancer'
Better Combined with wANNOVAR's disease model.
Control File

[10/19/2017] The detailed amino acid changes for indels are now included in the output (through -polish argument in table_annovar). The server also handles duplicated entries (multiple identical variants) in the input file correctly.

[08/25/2017] The variants reduction method (for disease gene finding from personal genomes) has been updated to the latest version.

[08/15/2017] All previous hg38 submissions in queue are being processed now. The variants reduction procedure (for disease gene finding) is being optimized and will be updated late August.

[07/31/2017] All databases are updated to 20170517 version. However, hg38 databaseare still being debugged and all hg38 analysis are in queue currently.

[10/22/2015] Now the filter is working for hg38! However, the custom filter is still not supported

[07/16/2015] Now we added another select called 'Individual Analysis', which is designed for VCF files. If you want to include all the individuals in your VCF file, please choose 'All annotations'. If you want to conduct individual based analysis (the first one if multiple samples are present), please choose 'Individual analysis'.

[04/01/2015] The ANNOVAR software have been updated to the newest version! hg38 reference genome was added!
The Disease Model has been modified and now the 'rare recessive Mendelian disease' and 'rare dominant Mendelian disease' don't exclude SNPs in dbSNP database any more!